PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00013g00510.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB_related
Protein Properties Length: 531aa    MW: 59012.6 Da    PI: 4.3531
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00013g00510.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.94.6e-08266313347
                               SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                               +W++eE+el+ ++v   ++      W+  a +++  R++k+++s+++++
  Peaxi162Scf00013g00510.1 266 KWSEEEEELFHEVVFSNPSSvgknFWNQLAVEFP-SRSRKELVSYYFNV 313
                               8*************9999889999**********.***********996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.7E-5262325IPR009057Homeodomain-like
SMARTSM007171.2E-4263316IPR001005SANT/Myb domain
SuperFamilySSF466897.65E-5264314IPR009057Homeodomain-like
PROSITE profilePS500906.295266314IPR017877Myb-like domain
CDDcd001670.00526266314No hitNo description
PfamPF002497.8E-7266313IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MVQKRPFGEE ELYEIPSKQP RHVEPSNQLV SFLEFPCESL AAKSYASGGD EDNFSKVKDP  60
TDKRTDGGDV AEVPFSSEKA IETGNHGSAS NSSWATSSTS EEDVRFELPF HLLTSSEYYN  120
IDPPPFRVVI HPREVYASLL SNPPRKLVPI GPDFQAEIPE LGAHKDQIHE SLNLPSQSQQ  180
SDLLDLHDEE NKLSGNCIIP MPKLDPADHD ENVGAGKSEC SCEDAGSFRC VRLHIMEARE  240
KLKESLGEES FVRLGFYDMG EVVAEKWSEE EEELFHEVVF SNPSSVGKNF WNQLAVEFPS  300
RSRKELVSYY FNVFILRKRA KQNRFDPLNI DSDNDEWHEI DDDIVAAGAK MTDEDEDSVV  360
ESPVYQLYPS CNEIYEDDKQ AYDEEAGGAT SEDVGSRKVS SDAAEACLDK LIVNNSSSGH  420
SIQPLDRHHS NEEGGHGVQD NCYTTDAAGV ASETQKGKSD KCKHWESQFA GVGSGRGHDF  480
VMEPSNGKEW DIGYLSCAKN KVDLLSTCSM IEEVFGDGAW SSKNRDGHGL S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1315321LRKRAKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016515357.10.0PREDICTED: uncharacterized protein LOC107832069
RefseqXP_016515358.10.0PREDICTED: uncharacterized protein LOC107832069
RefseqXP_016515359.10.0PREDICTED: uncharacterized protein LOC107832069
TrEMBLM1D6M80.0M1D6M8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000831670.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15141625